STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN01399.1poly(beta-D-mannuronate) lyase. (769 aa)    
Predicted Functional Partners:
SDM27581.1
Alginate lyase.
 
  
  0.888
SDN01058.1
Alginate lyase.
 
  
  0.832
SDN01090.1
Alginate lyase.
 
  
  0.829
SDN01368.1
Chondroitinase B.
 
    
0.776
SDM27532.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
     0.762
SDN01506.1
Transcriptional regulator, GntR family.
  
     0.762
SDN01451.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.590
SDN00114.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.585
SDM27556.1
Cupin domain-containing protein.
 
     0.576
SDN01426.1
poly(beta-D-mannuronate) lyase.
 
    
0.527
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.