STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN02883.1Xylose isomerase-like TIM barrel. (397 aa)    
Predicted Functional Partners:
SDN02804.1
Hypothetical protein.
 
  
 0.954
SDN02830.1
4-hydroxybenzoate polyprenyltransferase.
 
   
 0.952
SDN02773.1
Hypothetical protein.
 
   
 0.951
SDN02854.1
3-dehydroquinate synthase.
 
     0.949
SDN02911.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
 
     0.949
SDL88789.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
     0.721
SDN02938.1
Transmembrane family 220, helix.
       0.715
SDL60155.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
     0.714
SDM19354.1
Cytochrome c.
 
     0.690
SDN02744.1
tRNA-(ms[2]io[6]A)-hydroxylase.
       0.520
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.