STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN07464.1Two component transcriptional regulator, LytTR family. (230 aa)    
Predicted Functional Partners:
SDM30871.1
Histidine kinase.
  
  0.825
SDM32451.1
GHKL domain-containing protein.
  
  0.825
SDL67880.1
Histidine kinase.
  
  0.824
SDL89816.1
Histidine kinase.
  
  0.824
SDM30683.1
Histidine kinase.
  
  0.824
SDL48240.1
Histidine kinase.
  
  0.821
SDL89685.1
Sensor histidine kinase, LytS/YehU family.
  
  0.819
SDL26505.1
Histidine kinase.
  
  0.812
SDM14259.1
Tetratricopeptide repeat-containing protein.
  
  0.779
SDL49302.1
Signal transduction histidine kinase.
    
 0.778
Your Current Organism:
Kriegella aquimaris
NCBI taxonomy Id: 192904
Other names: DSM 19886, K. aquimaris, KCTC 22188, KMM 3665, Kriegella aquimaris Nedashkovskaya et al. 2008, Zobellia sp. KMM 3665
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.