STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
viuB_2Vibriobactin utilization protein ViuB. (264 aa)    
Predicted Functional Partners:
apxIB
Toxin RTX-I translocation ATP-binding protein.
   
  0.951
viuB_1
Vibriobactin utilization protein ViuB.
 
    
0.613
hmuT
Hemin-binding periplasmic protein HmuT.
 
    0.555
luxA
Alkanal monooxygenase alpha chain.
    
  0.492
GCA_001938545_01105
Hypothetical protein.
       0.443
zupT_1
Zinc transporter ZupT.
   
    0.405
ywnA
Putative HTH-type transcriptional regulator YwnA.
  
     0.400
Your Current Organism:
Idiomarina sp. 513
NCBI taxonomy Id: 1929465
Other names: I. sp. 5.13, Idiomarina sp. 5.13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.