STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tatA_3Sec-independent protein translocase protein TatA. (72 aa)    
Predicted Functional Partners:
tatB_1
Sec-independent protein translocase protein TatB.
 
 0.994
tatC_1
Sec-independent protein translocase protein TatC.
 
 0.969
tatC_2
Sec-independent protein translocase protein TatC.
  
 0.954
tatB_2
Sec-independent protein translocase protein TatB.
  
 0.948
glpG
Rhomboid protease GlpG.
    
 
 0.832
guaA
GMP synthase [glutamine-hydrolyzing].
  
    0.830
tatA_1
Sec-independent protein translocase protein TatA.
  
  
 
0.797
GCA_001938545_04096
Hypothetical protein.
       0.787
GCA_001938545_03405
Hypothetical protein.
  
     0.608
sspB
Stringent starvation protein B.
  
    0.589
Your Current Organism:
Idiomarina sp. 513
NCBI taxonomy Id: 1929465
Other names: I. sp. 5.13, Idiomarina sp. 5.13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.