STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002078605_00153Unannotated protein. (550 aa)    
Predicted Functional Partners:
GCA_002078605_01898
Unannotated protein.
  
 
 0.922
GCA_002078605_02628
Unannotated protein.
     
 0.910
GCA_002078605_00395
Unannotated protein.
  
 
 0.846
GCA_002078605_02651
Unannotated protein.
   
 
 0.790
GCA_002078605_01461
Unannotated protein.
   
 
 0.787
GCA_002078605_02109
Unannotated protein.
   
 
 0.787
GCA_002078605_00152
Unannotated protein.
       0.777
GCA_002078605_01600
Unannotated protein.
     
 0.765
GCA_002078605_01287
Unannotated protein.
    
 0.752
GCA_002078605_00151
Unannotated protein.
  
    0.750
Your Current Organism:
Salegentibacter sediminis
NCBI taxonomy Id: 1930251
Other names: KCTC 52477, MCCC 1H00173, S. sediminis, Salegentibacter sp. K5023, strain K5023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.