STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002078605_01627Unannotated protein. (189 aa)    
Predicted Functional Partners:
GCA_002078605_00517
Unannotated protein.
 
  
 0.939
GCA_002078605_00194
Unannotated protein.
  
 
 0.902
GCA_002078605_01628
Unannotated protein.
       0.802
GCA_002078605_01630
Unannotated protein.
       0.799
GCA_002078605_01629
Unannotated protein.
       0.796
GCA_002078605_02466
Unannotated protein.
   
 
 0.775
GCA_002078605_00967
Unannotated protein.
   
 0.717
GCA_002078605_02322
Unannotated protein.
  
 0.693
GCA_002078605_01347
Unannotated protein.
    
  0.619
GCA_002078605_01625
Unannotated protein.
       0.602
Your Current Organism:
Salegentibacter sediminis
NCBI taxonomy Id: 1930251
Other names: KCTC 52477, MCCC 1H00173, S. sediminis, Salegentibacter sp. K5023, strain K5023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.