STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIV_04480Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)    
Predicted Functional Partners:
CSIV_04475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.867
truB
tRNA pseudouridine(55) synthase TruB; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.848
CSIV_04490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.817
CSIV_04470
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family.
       0.738
CSIV_13225
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
CSIV_13180
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
CSIV_05465
Alpha-ketoglutarate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.589
CSIV_05635
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
CSIV_05515
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
Your Current Organism:
Microbacterium sp. CSIV
NCBI taxonomy Id: 1933777
Other names: M. sp. CSI-V, Microbacterium sp. CSI-V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.