STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOG16297.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)    
Predicted Functional Partners:
OOG16386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
OOG16298.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.572
OOG16296.1
SusC/RagA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
OOG16294.1
Glycosyl hydrolase family 32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 32 family.
 
   
 0.466
OOG16147.1
NAD(P)H-nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.457
OOG16295.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.449
OOG18963.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.428
BWD42_06635
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.428
OOG20009.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.428
OOG20043.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.428
Your Current Organism:
Sphingobacterium sp. CZUAM
NCBI taxonomy Id: 1933868
Other names: S. sp. CZ-UAM, Sphingobacterium sp. CZ-UAM
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