STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carB_2Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. (492 aa)    
Predicted Functional Partners:
carA_1
Carbamoyl-phosphate synthase small chain.
 0.999
carA_2
Carbamoyl-phosphate synthase small chain.
 0.999
carA_3
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
 0.998
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.991
pyrC_2
Dihydroorotase.
 
 0.986
argF
Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 
 0.974
gltB
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.946
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.936
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
   
  0.934
OOO01754.1
Hypothetical protein; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog.
  
 
 0.923
Your Current Organism:
Chromatiales bacterium USCgTaylor
NCBI taxonomy Id: 1934255
Other names: C. bacterium USCg_Taylor, Chromatiales bacterium USCg_Taylor
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