STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprF_2Outer membrane porin F. (383 aa)    
Predicted Functional Partners:
tolB_1
Protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.768
tolB_2
Protein TolB.
  
 0.768
OOO01991.1
Hypothetical protein.
       0.723
OOO01993.1
Hypothetical protein.
       0.714
guaA
GMP synthase [glutamine-hydrolyzing].
    
  0.706
motB
Motility protein B.
  
 
0.703
skp
Chaperone protein Skp; Belongs to the skp family.
  
 
 0.670
coxM
Alternative cytochrome c oxidase subunit 2.
   
 
  0.656
ctaD
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
 
  0.639
OOO02155.1
Hypothetical protein.
   
  0.587
Your Current Organism:
Chromatiales bacterium USCgTaylor
NCBI taxonomy Id: 1934255
Other names: C. bacterium USCg_Taylor, Chromatiales bacterium USCg_Taylor
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.