OUC16437.1 protein (Alkalinema sp. CACIAM) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OUC16437.1

Phycobilisome protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)

Predicted Functional Partners:

OUC15714.1

0.952

OUC15327.1

0.944

OUC13235.1

0.931

OUC15326.1

0.925

OUC16579.1

0.922

OUC15852.1

0.922

OUC16575.1

0.899

OUC15314.1

0.897

OUC15315.1

0.897

OUC13565.1

0.894

Your Current Organism:

Alkalinema sp. CACIAM

NCBI taxonomy Id: 1934309
Other names: A. sp. CACIAM 70d, Alkalinema sp. CACIAM 70d

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OUC13235.1	OUC13565.1	B0A82_18260	B0A82_16545	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
OUC13235.1	OUC15314.1	B0A82_18260	B0A82_07455	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.849
OUC13235.1	OUC15315.1	B0A82_18260	B0A82_07460	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.851
OUC13235.1	OUC15326.1	B0A82_18260	B0A82_07525	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Bleomycin hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
OUC13235.1	OUC15327.1	B0A82_18260	B0A82_07530	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Bleomycin hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
OUC13235.1	OUC15714.1	B0A82_18260	B0A82_05460	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	0.999
OUC13235.1	OUC15852.1	B0A82_18260	B0A82_04585	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycobilisome rod-core linker polypeptide CpcG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.927
OUC13235.1	OUC16437.1	B0A82_18260	B0A82_01795	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycobilisome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
OUC13235.1	OUC16575.1	B0A82_18260	B0A82_00865	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
OUC13235.1	OUC16579.1	B0A82_18260	B0A82_00885	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycobilisome rod-core linker polypeptide CpcG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.926
OUC13565.1	OUC13235.1	B0A82_16545	B0A82_18260	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.975
OUC13565.1	OUC15314.1	B0A82_16545	B0A82_07455	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.936
OUC13565.1	OUC15315.1	B0A82_16545	B0A82_07460	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.935
OUC13565.1	OUC15327.1	B0A82_16545	B0A82_07530	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bleomycin hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
OUC13565.1	OUC15714.1	B0A82_16545	B0A82_05460	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.	0.964
OUC13565.1	OUC15852.1	B0A82_16545	B0A82_04585	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phycobilisome rod-core linker polypeptide CpcG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.968
OUC13565.1	OUC16437.1	B0A82_16545	B0A82_01795	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phycobilisome protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
OUC13565.1	OUC16579.1	B0A82_16545	B0A82_00885	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phycobilisome rod-core linker polypeptide CpcG; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.968
OUC15314.1	OUC13235.1	B0A82_07455	B0A82_18260	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	0.849
OUC15314.1	OUC13565.1	B0A82_07455	B0A82_16545	Photosystem I reaction center subunit XII; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family.	Phycocyanin subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936