STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OUC12506.1S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family. (627 aa)    
Predicted Functional Partners:
OUC16412.1
CRISPR-associated protein Cmr2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.716
OUC14593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
OUC14598.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
B0A82_15080
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
OUC16410.1
Type III-B CRISPR module RAMP protein Cmr4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
OUC16323.1
High light inducible protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
OUC12425.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
OUC16543.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.576
OUC13830.1
Cellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
OUC13616.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
Your Current Organism:
Alkalinema sp. CACIAM
NCBI taxonomy Id: 1934309
Other names: A. sp. CACIAM 70d, Alkalinema sp. CACIAM 70d
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.