OUC12438.1 protein (Alkalinema sp. CACIAM) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

OUC12438.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)

Predicted Functional Partners:

OUC16311.1

0.770

OUC15527.1

0.770

OUC12437.1

0.767

OUC14409.1

0.762

OUC12321.1

0.762

OUC12791.1

0.749

OUC15119.1

0.748

OUC15118.1

0.746

OUC14332.1

0.746

OUC12452.1

0.744

Your Current Organism:

Alkalinema sp. CACIAM

NCBI taxonomy Id: 1934309
Other names: A. sp. CACIAM 70d, Alkalinema sp. CACIAM 70d

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OUC12321.1	OUC12438.1	B0A82_22860	B0A82_22575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
OUC12321.1	OUC12791.1	B0A82_22860	B0A82_20655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
OUC12321.1	OUC14332.1	B0A82_22860	B0A82_12645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
OUC12321.1	OUC14409.1	B0A82_22860	B0A82_12375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OUC12321.1	OUC15527.1	B0A82_22860	B0A82_06170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
OUC12437.1	OUC12438.1	B0A82_22565	B0A82_22575	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
OUC12437.1	OUC12452.1	B0A82_22565	B0A82_22570	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
OUC12437.1	OUC15118.1	B0A82_22565	B0A82_08605	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
OUC12437.1	OUC15119.1	B0A82_22565	B0A82_08610	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
OUC12437.1	OUC16311.1	B0A82_22565	B0A82_01935	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
OUC12438.1	OUC12321.1	B0A82_22575	B0A82_22860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
OUC12438.1	OUC12437.1	B0A82_22575	B0A82_22565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
OUC12438.1	OUC12452.1	B0A82_22575	B0A82_22570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
OUC12438.1	OUC12791.1	B0A82_22575	B0A82_20655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
OUC12438.1	OUC14332.1	B0A82_22575	B0A82_12645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
OUC12438.1	OUC14409.1	B0A82_22575	B0A82_12375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
OUC12438.1	OUC15118.1	B0A82_22575	B0A82_08605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
OUC12438.1	OUC15119.1	B0A82_22575	B0A82_08610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
OUC12438.1	OUC15527.1	B0A82_22575	B0A82_06170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
OUC12438.1	OUC16311.1	B0A82_22575	B0A82_01935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770

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Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.854

expected number of edges:

12

PPI enrichment p-value:

2.29e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005975

Carbohydrate metabolic process

7 of 171

0.96

0.76

0.0022

GO:0005992

Trehalose biosynthetic process

2 of 2

2.35

0.76

0.0406

GO:0005978

Glycogen biosynthetic process

2 of 3

2.18

0.75

0.0406

GO:0034637

Cellular carbohydrate biosynthetic process

4 of 55

1.21

0.61

0.0406

GO:0009058

Biosynthetic process

9 of 646

0.5

0.32

0.0406

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2962

Glycosyl transferases group 1, and Starch and sucrose metabolism

6 of 26

1.71

2.67

1.33e-07

CL:2806

Mixed, incl. Carbohydrate metabolic process, and Glycosyl transferases group 1

9 of 104

1.29

1.88

1.69e-08

CL:2997

Glucan metabolic process

2 of 5

1.95

0.87

0.0221

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00500

Starch and sucrose metabolism

6 of 17

1.9

3.3

1.47e-08

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0321

Glycogen metabolism

2 of 2

2.35

0.94

0.0185

KW-0320

Glycogen biosynthesis

2 of 3

2.18

0.93

0.0185

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