ARF65590.1 protein (Streptomyces violaceoruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARF65590.1

Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)

Predicted Functional Partners:

ARF65589.1

0.970

ARF65588.1

0.961

ARF60567.1

0.804

ARF65998.1

0.798

ARF66315.1

0.778

ARF65521.1

0.729

ARF61673.1

0.708

ARF65999.1

0.685

ARF62556.1

0.665

ARF62132.1

0.644

Your Current Organism:

Streptomyces violaceoruber

NCBI taxonomy Id: 1935
Other names: ATCC 14980, ATCC 19816, ATCC 3355, Actinomyces violaceus-ruber, BCRC 11489, CBS 569.68, CCRC 11489, CCRC:11489, DSM 40049, IFO 12826, ISP 5049, JCM 4423, KCTC 9787, NBRC 12826, NRRL B-12594, NRRL B-2935, NRRL B-3025, NRRL B-3319, NRRL-ISP 5049, S. violaceoruber, Streptomyces violaceiruber, Streptomyces violaceus-ruber, UNIQEM 203, VKM Ac-726

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF60567.1	ARF65588.1	B1H20_03565	B1H20_32350	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
ARF60567.1	ARF65590.1	B1H20_03565	B1H20_32360	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
ARF60567.1	ARF65998.1	B1H20_03565	B1H20_03560	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
ARF61673.1	ARF62132.1	B1H20_09835	B1H20_12505	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	0.829
ARF61673.1	ARF62556.1	B1H20_09835	B1H20_14970	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	0.849
ARF61673.1	ARF65589.1	B1H20_09835	B1H20_32355	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
ARF61673.1	ARF65590.1	B1H20_09835	B1H20_32360	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
ARF61673.1	ARF66315.1	B1H20_09835	B1H20_21145	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ARF62132.1	ARF61673.1	B1H20_12505	B1H20_09835	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
ARF62132.1	ARF65521.1	B1H20_12505	B1H20_31975	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
ARF62132.1	ARF65589.1	B1H20_12505	B1H20_32355	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ARF62132.1	ARF65590.1	B1H20_12505	B1H20_32360	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ARF62132.1	ARF65999.1	B1H20_12505	B1H20_03630	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
ARF62132.1	ARF66315.1	B1H20_12505	B1H20_21145	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
ARF62556.1	ARF61673.1	B1H20_14970	B1H20_09835	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
ARF62556.1	ARF65521.1	B1H20_14970	B1H20_31975	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
ARF62556.1	ARF65589.1	B1H20_14970	B1H20_32355	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ARF62556.1	ARF65590.1	B1H20_14970	B1H20_32360	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Fused response regulator/phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ARF62556.1	ARF65999.1	B1H20_14970	B1H20_03630	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
ARF62556.1	ARF66315.1	B1H20_14970	B1H20_21145	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About