STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph1_2Phytochrome-like protein cph1. (1016 aa)    
Predicted Functional Partners:
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
0.984
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.981
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
0.980
rpfC_2
Sensory/regulatory protein RpfC.
 
0.980
kinD_1
Sporulation kinase D.
 
 
 0.979
rpfC_3
Sensory/regulatory protein RpfC.
 
 
0.979
yycG_1
Sensor histidine kinase YycG.
 
0.978
tcrX
Putative transcriptional regulatory protein TcrX.
 
 
 0.977
cheY_5
Chemotaxis protein CheY.
 
 
 0.977
pleD_3
Stalked cell differentiation-controlling protein.
 
 0.977
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.