STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbU_1Phosphoserine phosphatase RsbU. (426 aa)    
Predicted Functional Partners:
AQT69310.1
Anti-sigma F factor.
 
 
 0.939
cph1_2
Phytochrome-like protein cph1.
 
 
 0.889
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.873
barA_1
Signal transduction histidine-protein kinase BarA.
 
  
 0.863
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
  
 0.858
rpfC_3
Sensory/regulatory protein RpfC.
 
  
 0.839
rpfC_2
Sensory/regulatory protein RpfC.
 
  
 0.836
zraS
Sensor protein ZraS.
  
  
 0.806
gchK
Globin-coupled histidine kinase.
  
  
 0.806
rsbV
Anti-anti-sigma-B factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.795
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.