STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpT_2PilD-dependent protein PddA. (284 aa)    
Predicted Functional Partners:
AQT68522.1
Type II secretion system protein G.
  
     0.745
AQT68525.1
Type II secretion system protein G.
  
     0.720
xcpT_7
PilD-dependent protein PddA.
  
     0.679
xcpT_1
PilD-dependent protein PddA.
  
     0.664
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
     0.634
AQT68606.1
Type IV pilus assembly protein PilM.
  
    0.570
AQT67380.1
Putative methyltransferase (contains TPR repeat).
  
     0.569
AQT67845.1
Transposase.
       0.559
pilE
Pilin.
  
     0.538
AQT67559.1
Protein restricted to Verrucomicrobia-Planctomycetes group.
  
     0.531
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.