STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swrCSwarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1012 aa)    
Predicted Functional Partners:
srpA
Solvent efflux pump periplasmic linker SrpA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.967
mdtA_1
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.851
oprM
Outer membrane protein OprM precursor.
 
 
 0.826
AQT67899.1
Ion channel.
 
   
 0.799
mdtA_2
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.667
bepF
Efflux pump periplasmic linker BepF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.604
czcB
Cation efflux system protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.575
tolC
Outer membrane protein TolC precursor.
 
 0.528
cusB
Cation efflux system protein CusB precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.512
yknX
Putative efflux system component YknX; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.509
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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