STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcpT_5PilD-dependent protein PddA. (135 aa)    
Predicted Functional Partners:
xcpT_13
PilD-dependent protein PddA.
  
  
  0.975
xcpT_8
PilD-dependent protein PddA.
  
  
  0.933
AQT68178.1
comEA protein.
 
    0.932
xcpT_11
PilD-dependent protein PddA.
  
  
 
0.915
outD
Pectic enzymes secretion protein OutD.
 
    0.844
AQT68177.1
Type II secretion system protein J.
  
   0.836
epsF_1
General secretion pathway protein F.
 
    0.807
AQT68175.1
Type II secretion system protein H.
  
    0.782
AQT68176.1
Tfp pilus assembly protein PilV.
       0.780
xpsE_1
Type II traffic warden ATPase.
 
   0.767
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.