STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB_1Biopolymer transport protein ExbB. (293 aa)    
Predicted Functional Partners:
AQT68421.1
Protein TolR.
 
 
 0.941
AQT68797.1
Biopolymer transport protein ExbD.
 
 
 0.856
AQT68798.1
Transport protein TonB.
 
 
 0.814
exbB_3
Biopolymer transport protein ExbB.
  
     0.760
AQT69504.1
Biopolymer transport protein ExbD.
 
 
 0.686
AQT68417.1
Putative 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.653
AQT68419.1
Marine proteobacterial sortase target protein.
       0.651
pilQ_2
Type IV pilus biogenesis and competence protein PilQ precursor.
  
     0.645
ykuD
Putative L,D-transpeptidase YkuD.
       0.639
AQT68424.1
Protein TolR.
  
 
 0.608
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.