STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnrH_2RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily. (201 aa)    
Predicted Functional Partners:
sigW_6
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
AQT68483.1
Hypothetical protein.
       0.773
sigW_2
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.773
ylaC_1
RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.770
sigM_2
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.766
sigW_1
Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.750
cnrH_4
RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.704
sigX_1
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.674
AQT68485.1
Hypothetical protein.
       0.646
AQT68486.1
Hypothetical protein.
       0.488
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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