STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrrB_4TPR repeat-containing protein YrrB. (570 aa)    
Predicted Functional Partners:
AQT67821.1
Type III secretion low calcium response chaperone LcrH/SycD.
 
 
 0.832
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.826
AQT69149.1
Tetratricopeptide repeat protein.
 
 
0.817
AQT68906.1
Tetratricopeptide repeat protein.
 
   
 0.796
rfaF_2
ADP-heptose--LPS heptosyltransferase 2.
  
 
 0.754
AQT69063.1
Hypothetical protein; Belongs to the UPF0235 family.
       0.752
AQT69064.1
Hypothetical protein.
       0.752
AQT67314.1
Lipoprotein NlpI.
 
 
 0.744
AQT69061.1
Putative protein involved in outer membrane biogenesis.
       0.727
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
    
  0.705
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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