STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garAGlycogen accumulation regulator GarA. (176 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
   0.568
fliN
Flagellar motor switch protein FliN.
  
 
 0.565
pknB
Serine/threonine-protein kinase PknB.
 
 
 
 0.521
AQT67821.1
Type III secretion low calcium response chaperone LcrH/SycD.
  
 
 0.510
stkP
Serine/threonine-protein kinase StkP.
 
 
 
 0.505
AQT70102.1
Type VI secretion system FHA domain protein.
 
  
 0.491
AQT69506.1
Marine proteobacterial sortase target protein.
 
   
 0.484
AQT69291.1
Hypothetical protein.
       0.479
AQT69763.1
Hypothetical protein.
  
  
 0.463
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
 
 0.454
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.