STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQT69384.1Outer membrane biogenesis protein BamB. (371 aa)    
Predicted Functional Partners:
AQT67186.1
Outer membrane assembly lipoprotein YfiO.
 
 
 0.758
bamA
Outer membrane protein Omp85.
  
 
 0.662
AQT69385.1
Hypothetical protein.
       0.645
purH
Bifunctional purine biosynthesis protein PurH.
     
 0.627
AQT67116.1
Hypothetical protein.
  
     0.615
bamB
Outer membrane protein assembly factor BamB precursor.
  
     0.608
AQT68668.1
Hypothetical protein.
  
     0.604
AQT69118.1
Hypothetical protein.
 
     0.527
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
  
    0.489
AQT68871.1
ResB-like family protein.
  
    0.480
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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