STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_2Arabinose operon regulatory protein. (299 aa)    
Predicted Functional Partners:
xylR_2
Xylose operon regulatory protein.
 
 
 0.773
melR
Melibiose operon regulatory protein.
  
     0.770
btr
Bacillibactin transport regulator.
  
     0.768
cdhR
Carnitine catabolism transcriptional activator.
  
     0.760
xylR_5
Xylose operon regulatory protein.
  
    0.677
xylR_3
Xylose operon regulatory protein.
  
    0.661
xylR_4
Xylose operon regulatory protein.
  
    0.660
cysL
CysJI operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.562
AQT69516.1
Glycosyl hydrolase family 109 protein 1 precursor.
  
    0.453
Your Current Organism:
Anaerohalosphaera lusitana
NCBI taxonomy Id: 1936003
Other names: A. lusitana, Anaerohalosphaera lusitana Pradel et al., DSM 103484, JCM 31926, KCTC 15600, Phycisphaerae bacterium ST-NAGAB-D1, strain ST-NAGAB-D1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.