AQR75058.1 protein (Sphingomonas sp. LM7) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AQR75058.1

Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)

Predicted Functional Partners:

AQR75059.1

0.958

AQR75062.1

0.935

AQR75312.1

0.919

AQR74939.1

0.912

AQR74999.1

0.912

AQR74859.1

0.909

AQR75289.1

0.909

AQR76002.1

0.909

AQR75938.1

0.908

AQR72300.1

0.900

Your Current Organism:

Sphingomonas sp. LM7

NCBI taxonomy Id: 1938607
Other names: S. sp. LM7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR72300.1	AQR74859.1	BXU08_00225	BXU08_15420	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.940
AQR72300.1	AQR74939.1	BXU08_00225	BXU08_15840	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AQR72300.1	AQR74999.1	BXU08_00225	BXU08_16220	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AQR72300.1	AQR75058.1	BXU08_00225	BXU08_16575	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AQR72300.1	AQR75062.1	BXU08_00225	BXU08_16595	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
AQR72300.1	AQR75289.1	BXU08_00225	BXU08_17910	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.963
AQR72300.1	AQR75312.1	BXU08_00225	BXU08_18060	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose mutarotase; Converts alpha-aldose to the beta-anomer.	0.914
AQR72300.1	AQR75938.1	BXU08_00225	BXU08_15365	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Galactose mutarotase; Converts alpha-aldose to the beta-anomer.	0.903
AQR72300.1	AQR76002.1	BXU08_00225	BXU08_17930	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.965
AQR74859.1	AQR72300.1	BXU08_15420	BXU08_00225	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AQR74859.1	AQR75058.1	BXU08_15420	BXU08_16575	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AQR74859.1	AQR75062.1	BXU08_15420	BXU08_16595	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AQR74859.1	AQR75289.1	BXU08_15420	BXU08_17910	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.928
AQR74859.1	AQR75312.1	BXU08_15420	BXU08_18060	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Galactose mutarotase; Converts alpha-aldose to the beta-anomer.	0.909
AQR74859.1	AQR75938.1	BXU08_15420	BXU08_15365	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Galactose mutarotase; Converts alpha-aldose to the beta-anomer.	0.909
AQR74859.1	AQR76002.1	BXU08_15420	BXU08_17930	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.	0.928
AQR74939.1	AQR72300.1	BXU08_15840	BXU08_00225	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase family 27; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AQR74939.1	AQR74999.1	BXU08_15840	BXU08_16220	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AQR74939.1	AQR75058.1	BXU08_15840	BXU08_16575	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AQR74939.1	AQR75062.1	BXU08_15840	BXU08_16595	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900