STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG28111.1Predicted dehydrogenase. (307 aa)    
Predicted Functional Partners:
SMG25717.1
UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase.
  
 
 0.886
SMG25952.1
dTDP-4-amino-4,6-dideoxygalactose transaminase.
  
 
 0.800
SMG28101.1
Hemolysin, contains CBS domains.
  
    0.784
SMG28097.1
GxxExxY protein.
       0.773
SMG28107.1
Protease-4.
       0.773
SMG28115.1
Hypothetical protein.
       0.773
SMG24584.1
NADH dehydrogenase.
   
 
  0.744
SMG31962.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
   
 
  0.744
SMG23847.1
dTDP-4-amino-4,6-dideoxygalactose transaminase.
  
 
 0.724
SMG20328.1
dTDP-4-amino-4,6-dideoxygalactose transaminase.
  
 
 0.660
Your Current Organism:
Fibrobacter sp. UWB15
NCBI taxonomy Id: 1938898
Other names: F. sp. UWB15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.