STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bepCOuter membrane efflux protein BepC precursor; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ. (441 aa)    
Predicted Functional Partners:
ttgC
Putative efflux pump outer membrane protein TtgC precursor; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
  
  0.940
ttgI
Toluene efflux pump outer membrane protein TtgI precursor; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
  
  0.930
mdtA_2
Multidrug transporter MdtA; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.865
czcA_1
Cation efflux system protein CzcA; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.839
ARN56881.1
Putative DNA-binding transcriptional regulator; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
 
   
 0.720
mdtA_1
Multidrug transporter MdtA; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.462
bepF
Efflux pump periplasmic linker BepF; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.454
czcB
Cation efflux system protein CzcB; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.421
Your Current Organism:
Sedimentisphaera salicampi
NCBI taxonomy Id: 1941349
Other names: DSM 101733, JCM 31929, KCTC 15597, Phycisphaerae bacterium SM-PulAB-D3, Phycisphaerae bacterium ST-PulAB-D4, S. salicampi, Sedimentisphaera salicampi Spring et al. 2018, bacterium SM-PulAB-D3, bacterium ST-PulAB-D4, strain ST-PulAB-D4
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