STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ramA(R)-stereoselective amidase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ. (267 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
    
 0.919
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.912
gltD
Glutamate synthase [NADPH] small chain; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
 0.910
gltB_2
Glutamate synthase [NADPH] small chain; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
 0.910
ARN57898.1
Aspartate aminotransferase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
 
 0.909
aspC
Aspartate aminotransferase; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
 
 0.909
pckG
Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
   
 
  0.804
korA_2
2-oxoglutarate oxidoreductase subunit KorA; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
  
 
  0.804
prpC1
2-methylcitrate synthase 1; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ; Belongs to the citrate synthase family.
   
 
  0.803
korB_2
2-oxoglutarate oxidoreductase subunit KorB; Bacteria and source DNA available from Stefan Spring, Leibniz Insitute DSMZ.
   
 
  0.803
Your Current Organism:
Sedimentisphaera salicampi
NCBI taxonomy Id: 1941349
Other names: DSM 101733, JCM 31929, KCTC 15597, Phycisphaerae bacterium SM-PulAB-D3, Phycisphaerae bacterium ST-PulAB-D4, S. salicampi, Sedimentisphaera salicampi Spring et al. 2018, bacterium SM-PulAB-D3, bacterium ST-PulAB-D4, strain ST-PulAB-D4
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