STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40APre-mRNA-processing factor 40 homolog A isoform X1. (892 aa)    
Predicted Functional Partners:
SF3A1
Splicing factor 3A subunit 1.
   
 0.953
RBM25
RNA-binding protein 25 isoform X1.
   
 0.928
SF3B1
Splicing factor 3B subunit 1.
   
 0.912
SNRNP35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.911
SNRPC
U1 small nuclear ribonucleoprotein C isoform X1.
   
 0.905
SNRPB2
U2 small nuclear ribonucleoprotein B'.
   
 0.890
SF3A2
Splicing factor 3A subunit 2.
   
 0.889
LUC7L3
Luc7-like protein 3.
   
 0.864
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
    
 0.857
CDK5RAP1
CDK5 regulatory subunit-associated protein 1.
 
 
    0.855
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.