GFER protein (Athene cunicularia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GFER

Mitochondrial FAD-linked sulfhydryl oxidase. (133 aa)

Predicted Functional Partners:

CHCHD4

0.974

LOC113483493

0.737

TIMM13

0.729

TIMM50

0.703

ENSACUP00000003555

0.694

SAV1

0.651

ENSACUP00000003968

0.638

TIMM17A

0.568

RCHY1

0.549

COX18

0.545

Your Current Organism:

Athene cunicularia

NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHCHD4	COX18	ENSACUP00000002137	ENSACUP00000013918	Mitochondrial intermembrane space import and assembly protein 40.	Cytochrome c oxidase assembly protein COX18, mitochondrial.	0.627
CHCHD4	ENSACUP00000003555	ENSACUP00000002137	ENSACUP00000003555	Mitochondrial intermembrane space import and assembly protein 40.	annotation not available	0.883
CHCHD4	ENSACUP00000003968	ENSACUP00000002137	ENSACUP00000003968	Mitochondrial intermembrane space import and assembly protein 40.	annotation not available	0.596
CHCHD4	GFER	ENSACUP00000002137	ENSACUP00000000517	Mitochondrial intermembrane space import and assembly protein 40.	Mitochondrial FAD-linked sulfhydryl oxidase.	0.974
CHCHD4	LOC113483493	ENSACUP00000002137	ENSACUP00000001431	Mitochondrial intermembrane space import and assembly protein 40.	Cytochrome c oxidase assembly protein subunit 17.	0.962
CHCHD4	RCHY1	ENSACUP00000002137	ENSACUP00000012264	Mitochondrial intermembrane space import and assembly protein 40.	RING finger and CHY zinc finger domain-containing protein 1.	0.562
CHCHD4	TIMM13	ENSACUP00000002137	ENSACUP00000013310	Mitochondrial intermembrane space import and assembly protein 40.	Mitochondrial import inner membrane translocase subunit TIM13.	0.864
CHCHD4	TIMM17A	ENSACUP00000002137	ENSACUP00000000926	Mitochondrial intermembrane space import and assembly protein 40.	Mitochondrial import inner membrane translocase subunit Tim17-A.	0.650
CHCHD4	TIMM50	ENSACUP00000002137	ENSACUP00000010920	Mitochondrial intermembrane space import and assembly protein 40.	Mitochondrial import inner membrane translocase subunit TIM50.	0.667
COX18	CHCHD4	ENSACUP00000013918	ENSACUP00000002137	Cytochrome c oxidase assembly protein COX18, mitochondrial.	Mitochondrial intermembrane space import and assembly protein 40.	0.627
COX18	ENSACUP00000003555	ENSACUP00000013918	ENSACUP00000003555	Cytochrome c oxidase assembly protein COX18, mitochondrial.	annotation not available	0.636
COX18	GFER	ENSACUP00000013918	ENSACUP00000000517	Cytochrome c oxidase assembly protein COX18, mitochondrial.	Mitochondrial FAD-linked sulfhydryl oxidase.	0.545
COX18	LOC113483493	ENSACUP00000013918	ENSACUP00000001431	Cytochrome c oxidase assembly protein COX18, mitochondrial.	Cytochrome c oxidase assembly protein subunit 17.	0.631
COX18	TIMM17A	ENSACUP00000013918	ENSACUP00000000926	Cytochrome c oxidase assembly protein COX18, mitochondrial.	Mitochondrial import inner membrane translocase subunit Tim17-A.	0.635
COX18	TIMM50	ENSACUP00000013918	ENSACUP00000010920	Cytochrome c oxidase assembly protein COX18, mitochondrial.	Mitochondrial import inner membrane translocase subunit TIM50.	0.678
ENSACUP00000003555	CHCHD4	ENSACUP00000003555	ENSACUP00000002137	annotation not available	Mitochondrial intermembrane space import and assembly protein 40.	0.883
ENSACUP00000003555	COX18	ENSACUP00000003555	ENSACUP00000013918	annotation not available	Cytochrome c oxidase assembly protein COX18, mitochondrial.	0.636
ENSACUP00000003555	ENSACUP00000003968	ENSACUP00000003555	ENSACUP00000003968	annotation not available	annotation not available	0.701
ENSACUP00000003555	GFER	ENSACUP00000003555	ENSACUP00000000517	annotation not available	Mitochondrial FAD-linked sulfhydryl oxidase.	0.694
ENSACUP00000003555	LOC113483493	ENSACUP00000003555	ENSACUP00000001431	annotation not available	Cytochrome c oxidase assembly protein subunit 17.	0.670