STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4BUbiquitination factor E4B. (1183 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 0.919
VCP
Transitional endoplasmic reticulum ATPase.
  
 
 0.906
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.891
UFD1
Ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1.
    
 
 0.879
UBE2D2
Ubiquitin-conjugating enzyme E2 D2 isoform X1.
    
 0.765
UBE2D1
Ubiquitin-conjugating enzyme E2 D1 isoform X1.
    
 0.748
NPLOC4
Nuclear protein localization protein 4 homolog.
    
 
 0.731
FAAP100
Fanconi anemia core complex-associated protein 100.
    
 
 0.731
UBQLN4
Ubiquilin-4.
   
 0.673
UBL7
Ubiquitin-like protein 7.
   
 0.666
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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