STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX6Probable ATP-dependent RNA helicase DDX6. (483 aa)    
Predicted Functional Partners:
EDC3
Enhancer of mRNA-decapping protein 3.
   
 0.997
PATL2
PAT1 homolog 2.
   
 0.994
LSM1
U6 snRNA-associated Sm-like protein LSm1.
   
 0.994
EIF4ENIF1
Eukaryotic translation initiation factor 4E transporter isoform X1.
   
 0.990
CNOT1
CCR4-NOT transcription complex subunit 1 isoform X1.
   
 0.988
DCP2
M7GpppN-mRNA hydrolase isoform X1.
   
 0.977
AGO2
Eukaryotic translation initiation factor 2C.
   
 0.973
DCP1A
MRNA-decapping enzyme 1A isoform X1.
   
 0.970
DCP1B
MRNA-decapping enzyme 1B.
   
 0.968
LSM14A
Protein LSM14 homolog A isoform X1.
   
 0.966
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.