STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHQ1Protein SHQ1 homolog. (606 aa)    
Predicted Functional Partners:
DKC1
H/ACA ribonucleoprotein complex subunit DKC1.
   
 0.997
TRUB1
LOW QUALITY PROTEIN: probable tRNA pseudouridine synthase 1.
   
 0.949
GAR1
H/ACA ribonucleoprotein complex subunit 1.
   
 
 0.945
TRUB2
Mitochondrial mRNA pseudouridine synthase TRUB2 isoform X1.
   
 0.902
NAF1
H/ACA ribonucleoprotein complex non-core subunit NAF1.
   
 
 0.773
RUVBL1
RuvB-like protein 1 (pontin 52).
    
 
 0.707
NOP58
Nucleolar protein 58.
   
 
 0.662
FCHSD2
F-BAR and double SH3 domains protein 2.
      
 0.531
PDZRN3
E3 ubiquitin-protein ligase PDZRN3.
      
 0.531
LONP2
Lon protease homolog 2, peroxisomal.
      
 0.531
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.