STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCAM1Vascular cell adhesion protein 1 isoform X1. (630 aa)    
Predicted Functional Partners:
ITGA9
Integrin alpha 9.
   
 0.947
ITGB1
Integrin beta-1 isoform X1.
   
 
 0.933
ITGA4
Integrin subunit alpha 4.
   
 0.698
SELE
Selectin, endothelial cell.
   
 
 0.663
IL6
Interleukin 6.
   
 
 0.600
ENSACUP00000013510
annotation not available
    
 
 0.575
PECAM1
Platelet endothelial cell adhesion molecule isoform X1.
    
0.554
CLDN1
Claudin-1.
      
 0.540
CX3CR1
CX3C chemokine receptor 1.
   
 0.505
CXCR4
C-X-C chemokine receptor type 4.
    
 0.503
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.