STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMFRE3 ubiquitin-protein ligase AMFR isoform X1. (815 aa)    
Predicted Functional Partners:
DERL1
Derlin-1.
    
 0.997
ERLEC1
Endoplasmic reticulum lectin 1.
   
 0.995
SEL1L
Protein sel-1 homolog 1 isoform X1.
   
 0.982
VCP
Transitional endoplasmic reticulum ATPase.
    
 0.971
SEL1L3
Protein sel-1 homolog 3.
   
 0.963
DERL3
Derlin-2-like.
   
 0.963
DERL2
Derlin-2/3.
   
 0.963
UFD1
Ubiquitin recognition factor in ER-associated degradation protein 1 isoform X1.
   
 0.960
FAM8A1
Protein FAM8A1.
    
 0.949
UBE2G2
Ubiquitin-conjugating enzyme E2 G2.
    
 0.941
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.