STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain-containing protein 6. (406 aa)    
Predicted Functional Partners:
RET
Proto-oncogene tyrosine-protein kinase receptor Ret isoform X1.
      
 0.538
PDXDC1
Pyridoxal-dependent decarboxylase domain-containing protein 1.
      
 0.533
SRRM3
Serine/arginine repetitive matrix protein 3.
      
 0.532
PPME1
Protein phosphatase methylesterase 1 isoform X1.
      
 0.531
PPP4R1
Serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X1.
    
 
 0.466
ENSACUP00000016278
annotation not available
    
 
 0.466
KDELR2
ER lumen protein-retaining receptor 2.
      
 0.436
JMJD8
Jumonji domain containing 8.
      
 0.422
LRIG3
Leucine-rich repeats and immunoglobulin-like domains protein 3.
      
 0.418
PTCH1
Protein patched homolog 1.
      
 0.402
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.