STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf78Telomere length and silencing protein 1 homolog. (214 aa)    
Predicted Functional Partners:
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.835
SLU7
Pre-mRNA-processing factor SLU7.
   
 
 0.817
PRPF8
Pre-mRNA-processing-splicing factor 8 isoform X1.
    
 
 0.802
NKAP
NF-kappa-B-activating protein.
   
 
  0.772
MED22
Mediator of RNA polymerase II transcription subunit 22 isoform X1.
   
  
 0.751
CWC22
Pre-mRNA-splicing factor CWC22 homolog.
    
 0.712
SYF2
Pre-mRNA-splicing factor SYF2.
   
 
 0.696
FAM32A
Protein FAM32A.
   
 
  0.672
PRKRIP1
PRKR-interacting protein 1.
   
 
 0.670
CCDC12
Coiled-coil domain-containing protein 12 isoform X1.
   
 
  0.669
Your Current Organism:
Athene cunicularia
NCBI taxonomy Id: 194338
Other names: A. cunicularia, Speotyto cunicularia, burrowing owl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.