CT0219 protein (Chlorobaculum tepidum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CT0219

Glycosyl transferase; Identified by match to protein family HMM PF00534. (354 aa)

Predicted Functional Partners:

CT0220

0.679

CT0221

0.513

CT0972

0.463

CT0218

0.456

CT0836

0.425

rfbC

0.406

Your Current Organism:

Chlorobaculum tepidum

NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT0218	CT0219	CT0218	CT0219	Hypothetical protein; Identified by Glimmer2; putative.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.456
CT0219	CT0218	CT0219	CT0218	Glycosyl transferase; Identified by match to protein family HMM PF00534.	Hypothetical protein; Identified by Glimmer2; putative.	0.456
CT0219	CT0220	CT0219	CT0220	Glycosyl transferase; Identified by match to protein family HMM PF00534.	Hypothetical protein; Identified by Glimmer2; putative.	0.679
CT0219	CT0221	CT0219	CT0221	Glycosyl transferase; Identified by match to protein family HMM PF00534.	Heptosyltransferase; Identified by match to protein family HMM PF01075.	0.513
CT0219	CT0836	CT0219	CT0836	Glycosyl transferase; Identified by match to protein family HMM PF00534.	Internalin-related protein; Identified by similarity to EGAD:43021; match to protein family HMM PF00560.	0.425
CT0219	CT0972	CT0219	CT0972	Glycosyl transferase; Identified by match to protein family HMM PF00534.	Anti-anti-sigma factor, putative; Identified by match to protein family HMM PF01740; match to protein family HMM PF02178.	0.463
CT0219	rfbC	CT0219	CT0306	Glycosyl transferase; Identified by match to protein family HMM PF00534.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.406
CT0220	CT0219	CT0220	CT0219	Hypothetical protein; Identified by Glimmer2; putative.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.679
CT0220	CT0221	CT0220	CT0221	Hypothetical protein; Identified by Glimmer2; putative.	Heptosyltransferase; Identified by match to protein family HMM PF01075.	0.620
CT0221	CT0219	CT0221	CT0219	Heptosyltransferase; Identified by match to protein family HMM PF01075.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.513
CT0221	CT0220	CT0221	CT0220	Heptosyltransferase; Identified by match to protein family HMM PF01075.	Hypothetical protein; Identified by Glimmer2; putative.	0.620
CT0836	CT0219	CT0836	CT0219	Internalin-related protein; Identified by similarity to EGAD:43021; match to protein family HMM PF00560.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.425
CT0836	CT0972	CT0836	CT0972	Internalin-related protein; Identified by similarity to EGAD:43021; match to protein family HMM PF00560.	Anti-anti-sigma factor, putative; Identified by match to protein family HMM PF01740; match to protein family HMM PF02178.	0.450
CT0972	CT0219	CT0972	CT0219	Anti-anti-sigma factor, putative; Identified by match to protein family HMM PF01740; match to protein family HMM PF02178.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.463
CT0972	CT0836	CT0972	CT0836	Anti-anti-sigma factor, putative; Identified by match to protein family HMM PF01740; match to protein family HMM PF02178.	Internalin-related protein; Identified by similarity to EGAD:43021; match to protein family HMM PF00560.	0.450
rfbC	CT0219	CT0306	CT0219	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Glycosyl transferase; Identified by match to protein family HMM PF00534.	0.406