STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0256Isoprenyl synthetase; Identified by similarity to EGAD:105518; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. (332 aa)    
Predicted Functional Partners:
fni
Isopentenyl-diphosphate delta-isomerase, putative; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
 
 0.983
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.974
CT1206
Polyprenyl synthetase; Identified by similarity to EGAD:40622; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
  
 
0.922
lytB
Penicillin tolerance protein LytB; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
 
 0.918
bchP
Geranylgeranyl hydrogenase; Identified by similarity to EGAD:102228; match to protein family HMM PF01360; match to protein family HMM PF07992; match to protein family HMM TIGR02023; match to protein family HMM TIGR02032.
  
 0.918
CT1386
Phytoene desaturase; Identified by similarity to EGAD:49612; match to protein family HMM PF00494.
  
 0.906
dprA
DprA/SMF protein, putative DNA processing factor; Identified by similarity to GP:443988; match to protein family HMM PF02481; match to protein family HMM TIGR00732.
       0.780
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
    0.686
CT1668
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.630
CT0260
Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
 
   
 0.622
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.