STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
modCMolybdenum ABC transporter, ATP-binding protein; Identified by similarity to EGAD:37571; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00638; match to protein family HMM TIGR02142; Belongs to the ABC transporter superfamily. (351 aa)    
Predicted Functional Partners:
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 0.999
CT0669
ABC transporter, permease protein; Identified by similarity to EGAD:15643; match to protein family HMM PF00528.
 
 0.995
modA-2
Molybdenum ABC transporter, periplasmic molybdenum-binding protein; Identified by similarity to EGAD:13554; match to protein family HMM PF01547; match to protein family HMM TIGR01256.
 
 
 0.973
CT0670
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to EGAD:13554; match to protein family HMM PF01547; match to protein family HMM TIGR01256.
 
 
 0.936
CT0668
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
  
 
0.922
CT0655
Peptide ABC transporter, ATP-binding protein; Identified by similarity to EGAD:30672; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
   
0.902
modE
Molybdenum transport protein ModE; Identified by similarity to EGAD:36950; match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638.
 
 
 
 0.768
iscU
iscU protein; Identified by similarity to GP:2271522; match to protein family HMM PF01592; match to protein family HMM PF04324.
     
 0.667
CT1786
nifU protein, putative; Identified by similarity to EGAD:5282; match to protein family HMM PF01106.
      
 0.581
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      
 0.580
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.