STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT0854Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992. (577 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by similarity to EGAD:109137; similarity to EGAD:134205; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
 
 0.999
nifJ
Pyruvate flavodoxin/ferrodoxin oxidoreductase; Identified by similarity to EGAD:9985; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
 
 
 0.986
CT0474
Hydrogenase, putative; Identified by similarity to EGAD:16288.
 
 0.944
dsrB-1
Sulfite reductase, dissimilatory-type, beta subunit; Identified by similarity to GP:2576394; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066.
 
   
 0.838
CT0163
Alpha oxoglutarate ferredoxin oxidoreductase, alpha subunit; Identified by similarity to EGAD:144640; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.806
dsrC-1
Sulfite reductase, dissimilatory-type, gamma subunit; Identified by similarity to EGAD:12892; match to protein family HMM PF04358.
     
 0.789
dsrF
dsrF protein; Identified by similarity to GP:3228383; match to protein family HMM PF02635.
 
   
 0.754
CT2246
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.743
hdrA-2
Heterodisulfide reductase, subunit A; Identified by similarity to EGAD:131300; match to protein family HMM PF00037; match to protein family HMM PF07992.
      0.734
dsrE
dsrE protein; Identified by similarity to GP:3228382; match to protein family HMM PF02635.
 
   
 0.730
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.