STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT1756Conserved hypothetical protein; Identified by similarity to EGAD:106343; match to protein family HMM PF02492. (233 aa)    
Predicted Functional Partners:
CT1755
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    0.995
CT1757
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.895
CT1758
iron(III) ABC transporter, periplasmic iron-binding protein, putative; Identified by match to protein family HMM PF01497.
 
     0.798
CT1753
Conserved hypothetical protein; Identified by similarity to GP:5739398.
       0.746
CT1754
Receptor, putative; Identified by similarity to EGAD:6619; match to protein family HMM PF00593; match to protein family HMM PF07715.
       0.746
CT1795
Hydrogenase assembly chaperone hypC/hupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
  
  
 0.614
hypD
Hydrogenase expression/formation protein HypD; Identified by similarity to SP:P26411; match to protein family HMM PF01924; match to protein family HMM TIGR00075.
  
  
 0.610
hupA
Hydrogenase expression/formation protein HupA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
 
 0.606
CT1759
Methyltransferase, UbiE/COQ5 family; Identified by similarity to EGAD:22837; match to protein family HMM PF01209.
 
     0.598
fecE
iron(III) ABC transporter, ATP-binding protein; Identified by similarity to EGAD:10430; match to protein family HMM PF00005.
 
     0.532
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.