STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypFHydrogenase maturation protein HypF; Identified by similarity to SP:O07451; match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143. (774 aa)    
Predicted Functional Partners:
hypE
Hydrogenase expression/formation protein HypE; Identified by similarity to EGAD:21451; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124.
 
 
 0.988
hypB
Hydrogenase accessory protein HypB; Identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073.
 
   
 0.978
hypD
Hydrogenase expression/formation protein HypD; Identified by similarity to SP:P26411; match to protein family HMM PF01924; match to protein family HMM TIGR00075.
 
  
 0.951
CT1795
Hydrogenase assembly chaperone hypC/hupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
 
 
 0.947
hupA
Hydrogenase expression/formation protein HupA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
   
 0.903
hydA
Hydrogenase/sulfur reductase, alpha subunit; Identified by similarity to EGAD:32898; match to protein family HMM PF00374.
 
   
 0.754
CT1796
Hypothetical protein; Identified by Glimmer2; putative.
       0.554
hupL
Uptake hydrogenase, large subunit; Identified by similarity to EGAD:15029; match to protein family HMM PF00374.
 
 
 
 0.517
CT1793
Conserved hypothetical protein; Identified by similarity to GP:7380693.
       0.515
hydD
Hydrogenase/sulfur reductase, delta subunit; Identified by similarity to EGAD:32897; match to protein family HMM PF01058.
 
  
 0.492
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.