STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I restriction system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1079 aa)    
Predicted Functional Partners:
hsdM-2
Type I restriction system adenine methylase; Identified by similarity to EGAD:7636; match to protein family HMM PF01170; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
 
 0.992
hsdS-2
Type I restriction system specificity protein; Identified by similarity to EGAD:20601; match to protein family HMM PF01420.
  
 0.984
hsdM-1
Type I restriction system adenine methylase; Identified by similarity to EGAD:7636; match to protein family HMM PF02384; match to protein family HMM PF02506.
 
 
 0.787
CT0905
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.787
CT1879
Conserved hypothetical protein; Identified by similarity to GP:3893841; match to protein family HMM PF04480.
       0.780
CT1159
Type III restriction system methylase; Identified by similarity to GP:2769574.
  
 
 0.746
hsdS-1
Type I restriction system specificity protein; Identified by similarity to EGAD:9645; match to protein family HMM PF01420.
  
  
 0.718
CT1399
Conserved hypothetical protein; Identified by similarity to EGAD:166868; match to protein family HMM PF04373.
  
    0.612
CT0676
Conserved hypothetical protein; Identified by similarity to GP:6460002; match to protein family HMM PF04326.
  
    0.527
CT1393
Conserved hypothetical protein, truncation; Identified by similarity to GP:5458605; match to protein family HMM PF04326.
  
    0.527
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.