STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydB-1Hydrogenase/sulfur reductase, beta subunit; Identified by similarity to EGAD:32895. (359 aa)    
Predicted Functional Partners:
hydG-1
Hydrogenase/sulfur reductase, gamma subunit; Identified by similarity to EGAD:32896; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08022.
  
 0.988
hydG-2
Hydrogenase/sulfur reductase, gamma subunit; Identified by similarity to GP:563906; match to protein family HMM PF00175.
  
 0.961
hydD
Hydrogenase/sulfur reductase, delta subunit; Identified by similarity to EGAD:32897; match to protein family HMM PF01058.
 
   
 0.910
hydA
Hydrogenase/sulfur reductase, alpha subunit; Identified by similarity to EGAD:32898; match to protein family HMM PF00374.
 
   
 0.909
CT1245
Heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; Identified by similarity to GP:3378542; match to protein family HMM PF02754.
 
 
 0.613
CT1248
Hydrogenase, iron-sulfur binding protein, putative; Identified by similarity to SP:Q50570; match to protein family HMM PF00037.
 
     0.574
nifJ
Pyruvate flavodoxin/ferrodoxin oxidoreductase; Identified by similarity to EGAD:9985; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
  
  
 0.564
prtC
Collagenase; Identified by similarity to GP:2505967; match to protein family HMM PF01136.
  
    0.524
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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