STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CT2105ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (256 aa)    
Predicted Functional Partners:
CT2104
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
 0.999
CT2106
Adhesion protein, putative; Identified by match to protein family HMM PF01297.
 
 
 0.999
CT0655
Peptide ABC transporter, ATP-binding protein; Identified by similarity to EGAD:30672; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.806
leuA-2
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
       0.701
crcB
crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.633
CT1455
Ferric uptake regulator family protein; Identified by similarity to SP:P48796; match to protein family HMM PF01475; Belongs to the Fur family.
  
  
 0.608
CT2101
Conserved hypothetical protein; Identified by similarity to EGAD:156264; match to protein family HMM PF02641.
       0.551
CT2103
Hypothetical protein; Identified by Glimmer2; putative.
       0.551
CT1737
Iron-dependent repressor; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023.
  
  
 0.528
CT1010
Identified by match to protein family HMM PF01566.
  
  
 0.420
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.