CT2242 protein (Chlorobaculum tepidum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CT2242

Cytochrome DsrJ; Identified by similarity to EGAD:104343. (117 aa)

Predicted Functional Partners:

CT2240

0.960

CT2241

0.926

dsrM

0.916

dsrK

0.913

dsrB-1

0.713

dsrA-1

0.706

dsrA-2

0.706

CT2245

0.635

CT2239

0.566

CT2238

0.513

Your Current Organism:

Chlorobaculum tepidum

NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT2238	CT2239	CT2238	CT2239	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	0.998
CT2238	CT2240	CT2238	CT2240	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	0.488
CT2238	CT2241	CT2238	CT2241	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	Polysulfide reductase, subunit B, putative; Identified by similarity to GP:4099070; match to protein family HMM PF00037; match to protein family HMM TIGR01409.	0.535
CT2238	CT2242	CT2238	CT2242	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	Cytochrome DsrJ; Identified by similarity to EGAD:104343.	0.513
CT2238	dsrK	CT2238	CT2243	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	dsrK protein; Identified by similarity to GP:3228387.	0.457
CT2238	dsrM	CT2238	CT2244	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	dsrM protein; Identified by similarity to GP:3228386.	0.586
CT2239	CT2238	CT2239	CT2238	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	0.998
CT2239	CT2240	CT2239	CT2240	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	0.520
CT2239	CT2241	CT2239	CT2241	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	Polysulfide reductase, subunit B, putative; Identified by similarity to GP:4099070; match to protein family HMM PF00037; match to protein family HMM TIGR01409.	0.520
CT2239	CT2242	CT2239	CT2242	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	Cytochrome DsrJ; Identified by similarity to EGAD:104343.	0.566
CT2239	CT2245	CT2239	CT2245	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	Hypothetical protein; Identified by Glimmer2; putative.	0.435
CT2239	dsrK	CT2239	CT2243	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	dsrK protein; Identified by similarity to GP:3228387.	0.440
CT2239	dsrM	CT2239	CT2244	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	dsrM protein; Identified by similarity to GP:3228386.	0.550
CT2240	CT2238	CT2240	CT2238	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Siroheme synthetase, putative; Identified by similarity to EGAD:14346; match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family.	0.488
CT2240	CT2239	CT2240	CT2239	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Porphyrin biosynthesis protein, putative; Similar to N-terminal 140 aa of E. coli cysG (siroheme synthase) and adjacent to hemD, which is similar to the remainder of cysG; identified by similarity to EGAD:6104; match to protein family HMM TIGR01470.	0.520
CT2240	CT2241	CT2240	CT2241	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Polysulfide reductase, subunit B, putative; Identified by similarity to GP:4099070; match to protein family HMM PF00037; match to protein family HMM TIGR01409.	0.999
CT2240	CT2242	CT2240	CT2242	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Cytochrome DsrJ; Identified by similarity to EGAD:104343.	0.960
CT2240	CT2245	CT2240	CT2245	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Hypothetical protein; Identified by Glimmer2; putative.	0.635
CT2240	dsrA-1	CT2240	CT0852	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Sulfite reductase, dissimilatory-type, alpha subunit; Identified by similarity to SP:O33998; match to protein family HMM PF01077; match to protein family HMM TIGR02064.	0.536
CT2240	dsrA-2	CT2240	CT2249	Polysulfide reductase, subunit C, putative; Identified by similarity to EGAD:8705; match to protein family HMM PF03916.	Sulfite reductase, dissimilatory-type, alpha subunit; Identified by similarity to SP:O33998; match to protein family HMM PF01077; match to protein family HMM TIGR02064.	0.536