STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpA-2Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (574 aa)    
Predicted Functional Partners:
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to EGAD:19648; match to protein family HMM PF00132; Belongs to the transferase hexapeptide repeat family.
  
    0.776
cafA
Ribonuclease G; Identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757.
       0.723
CT0979
Membrane-bound lytic murein transglycosylase, putative; Identified by similarity to EGAD:8903; match to protein family HMM PF01464; match to protein family HMM PF01476.
 
   
 0.626
amiB
N-acetylmuramoyl-L-alanine amidase; Identified by similarity to EGAD:49963; match to protein family HMM PF01520.
 
  
 0.486
lepB
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
 
   
 0.474
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
    0.445
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to EGAD:16045; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.415
oadA
Oxaloacetate decarboxylase, alpha subunit; Identified by similarity to EGAD:22726; match to protein family HMM PF00364; match to protein family HMM PF00682.
  
    0.402
CT2262
Conserved hypothetical protein; Identified by similarity to EGAD:156775; match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
       0.400
Your Current Organism:
Chlorobaculum tepidum
NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.